PP_0052CYG.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Brazil/PP_0052CYG.1/2026-01-06
Ana Beatriz Muniz, Dejanane Silva, Matilde Mejia, Valdinete Nascimento, Victor Souza & Felipe Naveca

ILMD-Fiocruz

Sample details

Collection date
2026-01-06
Sampling location
Brazil (Amazonas)
City
Manaus

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2026-03-05 14:32bachavesRESTRICTED until 2027-03-05
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Host

Host
Homo sapiens

Sequencing

Sequencing instrument
Illumina NextSeq 1000
Depth of coverage
70

Submission details

Submission ID
ITpS_56w_001Hv_001
Submitting group
Date submitted
2026-03-05 14:32:12 UTC
Date released
2026-03-05 14:32:36 UTC
Earliest release date
2026-03-05

Alignment and QC

Length
15145 (71.9%)
# of SNPs
126
# of inserted bases
45
# of deleted bases
57
# of unknown bases
4218

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • C152A
  • C212T
  • G513T
  • C564T
  • T565A
  • A572C
  • G1385A
  • C1591T
  • C1714A
  • G1732A
  • T1747A
  • T1846C
  • G1963A
  • C1996T
  • C2074T
  • C2198T
  • T2340C
  • T2457C
Deletions

5643-5699
Insertions

ins_1095:N, ins_2286:AAAAATA, ins_3204:GAAAGAA, ins_5252:NNAAACCCTCCACTC, ins_15092:ATAT, ins_15222:GAGAAAAAAAG

Amino acid mutations

Mutations called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:R209Q
  • F:S211N

G

  • G:P214S
  • G:P221L
  • G:I227T
  • G:I252T

L

  • L:K570R
  • L:M646L
  • L:P1720S
  • L:R1759K
  • L:R1872K
  • L:G1896W
  • L:H1897D
  • L:T1987I
  • L:L2017F
  • L:A2119T

M2-1

  • M2-1:S179P

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:D32E

P

  • P:T72A
Deletions
N/A
Insertions

G

ins_G:203:KPSTQ

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