PP_0052CXJ.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Brazil/PP_0052CXJ.1/2026-01-05
Ana Beatriz Muniz, Dejanane Silva, Matilde Mejia, Valdinete Nascimento, Victor Souza & Felipe Naveca

ILMD-Fiocruz

Sample details

Collection date
2026-01-05
Sampling location
Brazil (Amazonas)
City
Manaus

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2026-03-05 14:32bachavesRESTRICTED until 2027-03-05
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Host

Host
Homo sapiens

Sequencing

Sequencing instrument
Illumina NextSeq 1000
Depth of coverage
125

Submission details

Submission ID
ITpS_rSS_001Hu_001
Submitting group
Date submitted
2026-03-05 14:32:12 UTC
Date released
2026-03-05 14:32:36 UTC
Earliest release date
2026-03-05

Alignment and QC

Length
13854 (65.8%)
# of SNPs
115
# of inserted bases
11
# of deleted bases
59
# of unknown bases
3889

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G1385A
  • C1591T
  • C1714A
  • G1732A
  • T1846C
  • A1885G
  • A1897G
  • G1963A
  • C1996T
  • A2038G
  • C2074T
  • C2198T
  • T2340C
  • C2484T
  • A2518G
  • C2554T
  • T2697C
  • G2787A
Deletions

5644-5702
Insertions

ins_3200:GGAAGAA, ins_15092:ATAT

Amino acid mutations

Mutations called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:R209Q
  • F:S211N
  • F:V447A

G

  • G:I118T
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T

L

  • L:K570R
  • L:M646L
  • L:R1759K
  • L:R1872K
  • L:T1987I
  • L:L2017F
  • L:A2119T

M2-1

  • M2-1:S179P

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

N

  • N:V97I

P

  • P:T72A
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue