PP_0052CWL.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Brazil/PP_0052CWL.1/2026-01-02
Ana Beatriz Muniz, Dejanane Silva, Matilde Mejia, Valdinete Nascimento, Victor Souza & Felipe Naveca

ILMD-Fiocruz

Sample details

Collection date
2026-01-02
Sampling location
Brazil (Amazonas)
City
Manaus

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2026-03-05 14:32bachavesRESTRICTED until 2027-03-05
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Host

Host
Homo sapiens

Sequencing

Sequencing instrument
Illumina NextSeq 1000
Depth of coverage
701

Submission details

Submission ID
ITpS_exQ_001Ht_001
Submitting group
Date submitted
2026-03-05 14:32:12 UTC
Date released
2026-03-05 14:32:36 UTC
Earliest release date
2026-03-05

Alignment and QC

Length
15093 (99.5%)
# of SNPs
156
# of inserted bases
11
# of deleted bases
62
# of unknown bases
1

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • C152A
  • C212T
  • G513T
  • C564T
  • G579A
  • C598T
  • T707C
  • C952A
  • G955A
  • C1312T
  • G1385A
  • C1591T
  • C1714A
  • G1732A
  • C1792T
  • T1846C
  • A1885G
  • A1897G
Deletions

973, 4586, 5393-5452
Insertions

ins_3204:GAAAGAA, ins_15092:ATAT

Amino acid mutations

Mutations called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:R209Q
  • F:S211N

G

  • G:A74V
  • G:K85E
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L

L

  • L:S100T
  • L:K260R
  • L:K570R
  • L:M646L
  • L:R1759K
  • L:R1872K
  • L:I1932V
  • L:T1987I
  • L:L2017F
  • L:A2119T

M2-1

  • M2-1:S179P

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:D32E

NS2

  • NS2:N123K

P

  • P:T72A
Deletions

G

G:252-271
Insertions
N/A

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