PP_004K477.1

Ireland/GIRL00064751/2025-09
Michael Carr, Laura Fahey, Brian Keogan, Alan Rice, Daniel Hare & Cillian F. De Gascun

National Virus Reference Laboratory, University College Dublin, Belfield, Dublin, Ireland

Sample details

Collection date
2025-09
Sampling location
Ireland
Isolate name
GIRL00064751

Data use terms

Data use terms
OPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
F.2

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host

Sequencing

Amplicon PCR primer scheme
ARTIC MPXV 400bp - https://labs.primalscheme.com/detail/artic-inrb-mpox/400/v1.0.0/?q=
Sequencing instrument
ILLUMINA
Reference genome accession
PX667572.1
Consensus sequence software name
ivar
Consensus sequence software version
1.4.2
Depth of coverage
644
Breadth of coverage
73

Submission details

Submission ID
GIRL00064751
Submitting group
Date submitted
2026-02-17 15:45:11 UTC
Date released
2026-02-17 15:45:50 UTC
Earliest release date
2026-02-17

Alignment and QC

Length
195382 (72.6%)
# of SNPs
72
# of inserted bases
1
# of deleted bases
10
# of unknown bases
52234

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions
  • G1262A
  • G2591A
  • G3522A
  • C3818T
  • G12690A
  • G14000T
  • G15428A
  • C20453T
  • G21723A
  • C22167T
  • C23564T
  • G25213A
  • G25661A
  • T28175C
  • G30367A
  • C31006T
  • G31053A
  • G34459A
Deletions
133177-133186
Insertions
ins_178048:T

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG001

  • OPG001:S105L

OPG002

  • OPG002:S54F

OPG003

  • OPG003:D264N

OPG023

  • OPG023:P71S

OPG025

  • OPG025:A423D

OPG040

  • OPG040:S89F

OPG047

  • OPG047:R48C

OPG053

  • OPG053:P78S

OPG056

  • OPG056:E125K

OPG057

  • OPG057:E353K

OPG071

  • OPG071:L108F

OPG072

  • OPG072:D56N

OPG092

  • OPG092:D196N

OPG093

  • OPG093:S30L
  • OPG093:D88N

OPG094

  • OPG094:M142I

OPG109

  • OPG109:H740Y

OPG118

  • OPG118:K606E

OPG120

  • OPG120:D151N

OPG136

  • OPG136:D98N

OPG139

  • OPG139:A17T

OPG145

  • OPG145:E62K
  • OPG145:E435K

OPG150

  • OPG150:S307L

OPG188

  • OPG188:E12K

OPG193

  • OPG193:L263F

OPG210

  • OPG210:D209N
  • OPG210:P722S
  • OPG210:M1741I
Deletions
N/A
Insertions
N/A

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