PP_004K477.1

Display Name: Ireland/PP_004K477.1/2025-09
Michael Carr, Laura Fahey, Brian Keogan, Alan Rice, Daniel Hare & Cillian F. De Gascun

Sample details

Collection date
2025-09
Country
Ireland
Isolate name
GIRL00064751

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-17 15:45lfaheyOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
F.2

Authors

Author affiliations
National Virus Reference Laboratory, University College Dublin, Belfield, Dublin, Ireland

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host name - scientific
Homo sapiens

Sequencing

Amplicon PCR primer scheme
ARTIC MPXV 400bp - https://labs.primalscheme.com/detail/artic-inrb-mpox/400/v1.0.0/?q=
Sequencing instrument
Illumina NextSeq
Reference genome accession
PX667572.1
Consensus sequence software name
ivar
Consensus sequence software version
1.4.2
Depth of coverage
644
Breadth of coverage
73

Alignment and QC metrics

Length
195382
Completeness
72.59%
# of SNPs
72
# of inserted bases
1
# of deleted bases
10
# of ambiguous bases
0
# of unknown bases
52234
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
GIRL00064751
Submitting group
Date submitted
2026-02-17 15:45:11 UTC
Date released
2026-02-17 15:45:50 UTC
Earliest release date
2026-02-17

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G1262A
  • G2591A
  • G3522A
  • C3818T
  • G12690A
  • G14000T
  • G15428A
  • C20453T
  • G21723A
  • C22167T
  • C23564T
  • G25213A
  • G25661A
  • T28175C
  • G30367A
  • C31006T
  • G31053A
  • G34459A
    • Deletions
    133177-133186
    Insertions
    ins_178048:T

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG001

  • OPG001:S105L

    • OPG002

  • OPG002:S54F

    • OPG003

  • OPG003:D264N

    • OPG023

  • OPG023:P71S

    • OPG025

  • OPG025:A423D

    • OPG040

  • OPG040:S89F

    • OPG047

  • OPG047:R48C

    • OPG053

  • OPG053:P78S

    • OPG056

  • OPG056:E125K

    • OPG057

  • OPG057:E353K

    • OPG071

  • OPG071:L108F

    • OPG072

  • OPG072:D56N

    • OPG092

  • OPG092:D196N

    • OPG093

  • OPG093:S30L
  • OPG093:D88N

    • OPG094

  • OPG094:M142I

    • OPG109

  • OPG109:H740Y

    • OPG118

  • OPG118:K606E

    • OPG120

  • OPG120:D151N

    • OPG136

  • OPG136:D98N

    • OPG139

  • OPG139:A17T

    • OPG145

  • OPG145:E62K
  • OPG145:E435K

    • OPG150

  • OPG150:S307L

    • OPG188

  • OPG188:E12K

    • OPG193

  • OPG193:L263F

    • OPG210

  • OPG210:D209N
  • OPG210:P722S
  • OPG210:M1741I
    • Deletions
    None
    Insertions
    None

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