PP_004JSQL.1

Display Name: France/PP_004JSQL.1/2025-07-29
K. Bollore, A. Mignotte, G. Lacour, J. Mocq, O. Courot, J. Hanin, G. Piorkowski, R. Amaral, A. Fontaine, R. Klitting, X. de Lamballerie & Y. Simonin

Sample details

Collection date
2025-07-29
Country
France
Admin level 1
Occitanie
Admin level 2
Montpellier

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-11 16:27raphaelle.klitting@posteo.deOPEN
Data use terms URL

Lineage

Lineage
2

Authors

Author affiliations
Pathogenesis and Control of Chronic and Emerging Infections, Universite de Montpellier, National Institute of Health and Medical Research, Montpellier, France ; Unité des Virus Émergents, Aix-Marseille Univ, Università di Corsica, IRD 190, National Institute of Health and Medical Research 1207, Institut de Recherche Biomédicale des Armées, Marseille

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Sampling

Collection device
MX

Host

Host name - scientific
Culex

Sequencing

Sequencing instrument
Ion Torrent

Alignment and QC metrics

Length
10319
Completeness
79.94%
# of SNPs
1750
# of inserted bases
6
# of deleted bases
432
# of ambiguous bases
0
# of unknown bases
1928
# of frame shifts
1
# of stop codons
0
Frame shifts
NS4B:31-33(nt:7006-7014)

Submission details

Submission ID
MX_MTP_TAP_250729
Submitting group
Date submitted
2026-02-11 16:26:59 UTC
Date released
2026-02-11 16:28:06 UTC
Earliest release date
2026-02-11

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C123T
  • G126A
  • G128A
  • A156T
  • T167G
  • G168A
  • T180A
  • T199C
  • C204T
  • C210T
  • C216G
  • G219A
  • G222C
  • A231T
  • T234C
  • C246T
  • G261A
  • A267T
    • Deletions
    6994-6996, 10393-10410, 10421-10436, 10447-10535, 10544-10645, 10651-10713, 10718-10858
    Insertions
    ins_7005:GTTGA, ins_7014:G

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:M15L

    • NS1

  • NS1:S9G
  • NS1:Y34F
  • NS1:K44R
  • NS1:K51A
  • NS1:V71I
  • NS1:E94N
  • NS1:S99A
  • NS1:T105A
  • NS1:I113M
  • NS1:L123I
  • NS1:V135I
  • NS1:K141E
  • NS1:Q146A
  • NS1:L153M
  • NS1:K170R
  • NS1:V171I
  • NS1:S174T
  • NS1:L192M
  • NS1:I194V
  • NS1:R205G

    • NS2A

  • NS2A:S201C
  • NS2A:L203I
  • NS2A:L212V
  • NS2A:I223M

    • NS2B

  • NS2B:A41V
  • NS2B:S61T
  • NS2B:M88I
  • NS2B:V103A
  • NS2B:V120I

    • NS3

  • NS3:K11R
  • NS3:Q92H
  • NS3:F130Y
  • NS3:D172E
  • NS3:I175A
  • NS3:R203K
  • NS3:R215K
  • NS3:A233S
  • NS3:P249H
  • NS3:N253S
  • NS3:I597A
  • NS3:A610S

    • NS4A

  • NS4A:I6V
  • NS4A:K11R
  • NS4A:T64S
  • NS4A:M65L
  • NS4A:A85V
  • NS4A:V86I
  • NS4A:V89A

    • NS4B

  • NS4B:S11N
  • NS4B:F17L
  • NS4B:Q19H
  • NS4B:R20K
  • NS4B:I21P
  • NS4B:T116A
  • NS4B:I168V
  • NS4B:L183M
  • NS4B:K193R
  • NS4B:I202T

    • NS5

  • NS5:Q18H
  • NS5:I33T
  • NS5:K45R
  • NS5:V49I
  • NS5:I78V
  • NS5:R101K
  • NS5:C139A
  • NS5:C140S
  • NS5:I162V
  • NS5:R177K
  • NS5:V181I
  • NS5:K190R
  • NS5:L197T
  • NS5:R224H
  • NS5:V229I
  • NS5:R247K
  • NS5:Y254F
  • NS5:R287K

    • capsid

  • capsid:S11N
  • capsid:V24G
  • capsid:S100T
  • capsid:K108T
  • capsid:T109A
  • capsid:I111F
  • capsid:A112T
  • capsid:V113I
  • capsid:M114L
  • capsid:I115L
  • capsid:S120C
  • capsid:V121A

    • env

  • env:E55D
  • env:T64S
  • env:K71R
  • env:D83E
  • env:R93K
  • env:S122T
  • env:I126T
  • env:R128W
  • env:T129I
  • env:L131Q
  • env:V159A
  • env:L167F
  • env:A172S
  • env:N199S
  • env:T205S
  • env:T208A
  • env:T210S
  • env:V232T

    • prM

  • prM:M44L
  • prM:D46E
  • prM:S57A
  • prM:A73S
  • prM:M112L
  • prM:V156A
  • prM:V157I
    • Deletions
    NS4B:28-30
    Insertions
    ins_NS4B:22:TRETTLG

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