PP_004HLGB.1

Display Name: USA/PP_004HLGB.1/2025-12-27
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Sample details

Collection date
2025-12-27
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-03484

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-28 05:01insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.6

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-01-27
NCBI update date
2026-01-27
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15135
Completeness
91.32%
# of SNPs
132
# of inserted bases
0
# of deleted bases
3
# of ambiguous bases
0
# of unknown bases
1237
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX892619.1
Submitting group
Date submitted
2026-01-28 05:01:36 UTC
Date released
2026-01-28 05:09:41 UTC
Earliest release date
2026-01-27

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G434A
  • A511G
  • G513T
  • G546A
  • G579A
  • C610T
  • T760C
  • C817T
  • C904A
  • C988T
  • C1005T
  • C1204T
  • A1357G
  • G1385A
  • C1429T
  • G1480A
  • T1534C
  • C1577T
    • Deletions
    973, 7402, 7403
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:R209Q
  • F:S211N

    • G

  • G:A74V
  • G:R98G
  • G:S119P
  • G:K199R
  • G:L217P
  • G:I252T
  • G:R260K
  • G:S265P
  • G:I268T
  • G:L270P
  • G:S275P
  • G:S283P
  • G:L284P
  • G:Y285H
  • G:E290K
  • G:*311Q

    • L

  • L:K192R
  • L:I1719T
  • L:F1731L
  • L:E1738G
  • L:T1742M
  • L:F1760L
  • L:T1987I
  • L:E2165D

    • M2-1

  • M2-1:T180I

    • M2-2

  • M2-2:I2T

    • N

  • N:V97I

    • NS1

  • NS1:M126I
    • Deletions
    None
    Insertions
    None

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