PP_004HL6X.1

Display Name: USA/PP_004HL6X.1/2025-12-26
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Sample details

Collection date
2025-12-26
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-03474

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-28 05:01insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-01-27
NCBI update date
2026-01-27
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15147
Completeness
96.97%
# of SNPs
143
# of inserted bases
11
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
377
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX892609.1
Submitting group
Date submitted
2026-01-28 05:01:36 UTC
Date released
2026-01-28 05:09:41 UTC
Earliest release date
2026-01-27

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • C152A
  • C212T
  • G513T
  • C564T
  • G579A
  • T707C
  • G955A
  • G1385A
  • C1591T
  • C1714A
  • G1732A
  • T1846C
  • G1963A
  • C1996T
  • C2074T
  • C2198T
  • T2285A
  • T2340C
    • Deletions
    973, 4586
    Insertions
    ins_3204:GAAAGAA, ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:R209Q
  • F:S211N

    • G

  • G:A74V
  • G:K85E
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:I268T

    • L

  • L:K260R
  • L:K570R
  • L:M646L
  • L:Y1590H
  • L:R1759K
  • L:R1872K
  • L:T1987I
  • L:L2017F
  • L:A2119T

    • M2-1

  • M2-1:S179P

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

    • N

  • N:V97I

    • NS1

  • NS1:D32E

    • P

  • P:T72A
    • Deletions
    None
    Insertions
    None

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