PP_004HKVK.1

Display Name: USA/PP_004HKVK.1/2025-12-21
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Sample details

Collection date
2025-12-21
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-03463

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-28 05:01insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-01-27
NCBI update date
2026-01-27
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
14627
Completeness
91.72%
# of SNPs
142
# of inserted bases
0
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
668
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX892598.1
Submitting group
Date submitted
2026-01-28 05:01:36 UTC
Date released
2026-01-28 05:09:41 UTC
Earliest release date
2026-01-27

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G513T
  • G579A
  • C685T
  • T729C
  • T760C
  • T898C
  • C998A
  • T1171C
  • G1385A
  • G1732A
  • C1804T
  • T1846C
  • C2074T
  • C2198T
  • C2554T
  • C2691T
  • A2841G
  • A2853G
    • Deletions
    973, 4586
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P
  • F:T555A

    • G

  • G:A74V
  • G:S100G
  • G:P101S
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:K570R
  • L:R1759K
  • L:A1972V
  • L:T1987I

    • M2-2

  • M2-2:C49F

    • N

  • N:V97I

    • NS2

  • NS2:V49A

    • SH

  • SH:I49T
    • Deletions
    None
    Insertions
    None

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