PP_004HBTX.1

Display Name: USA/PP_004HBTX.1/2025-12-09
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels & S. Namugenyi

Sample details

Collection date
2025-12-09
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVA-03339

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-11 04:58insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3.7

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-01-10
NCBI update date
2026-01-10
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15054
Completeness
91.70%
# of SNPs
212
# of inserted bases
8
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
1085
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX781804.1
Submitting group
Date submitted
2026-01-11 04:58:26 UTC
Date released
2026-01-11 05:06:26 UTC
Earliest release date
2026-01-10

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • C228T
  • T231C
  • G587T
  • T619C
  • G637A
  • G693A
  • G1034A
  • G1050A
  • G1077A
  • A1080G
  • A1091T
  • T1359C
  • T1413A
  • T1422C
  • A1597G
  • T1708C
    • Deletions
    4592
    Insertions
    ins_3154:A, ins_15053:CAAAAA, ins_15115:T

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I

    • G

  • G:H67N
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106R
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151Q
  • G:N178G
  • G:K221R
  • G:G224E
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:P274L

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:R2117K
  • L:S2142C

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

    • N

  • N:I163V
  • N:V352A

    • NS2

  • NS2:R32K

    • P

  • P:T92M
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue