PP_004FAMF.1

Display Name: USA/PP_004FAMF.1/2025-11-01
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels & S. Namugenyi

Sample details

Collection date
2025-11-01
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVA-03259

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-25 00:58insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3.12

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-12-23
NCBI update date
2025-12-23
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15047
Completeness
96.65%
# of SNPs
203
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
332
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX698269.1
Submitting group
Date submitted
2025-12-25 00:58:29 UTC
Date released
2025-12-25 01:06:31 UTC
Earliest release date
2025-12-23

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • A357G
  • G587T
  • T616C
  • C686T
  • G1034A
  • G1050A
  • G1077A
  • A1275G
  • A1341G
  • T1359C
  • G1368A
  • T1413A
  • T1422C
  • C1788T
  • C1806T
  • A2160T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I
  • F:S276N
  • F:A543T

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:I114V
  • G:P126S
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:P230T
  • G:N242D
  • G:S243I
  • G:S250T
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L

    • L

  • L:P171L
  • L:A173S
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:E1190D
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:V2129I

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

    • N

  • N:V352A

    • P

  • P:L55P
  • P:T72N
  • P:T92M

    • SH

  • SH:V49I
    • Deletions
    None
    Insertions
    None

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