PP_004EUTM.1

Display Name: USA/PP_004EUTM.1/2025-10-20
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels & S. Namugenyi

Sample details

Collection date
2025-10-20
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVA-03203

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-17 20:39insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.2.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-12-14
NCBI update date
2025-12-14
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15046
Completeness
94.90%
# of SNPs
204
# of inserted bases
1
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
599
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX675166.1
Submitting group
Date submitted
2025-12-17 20:39:22 UTC
Date released
2025-12-17 20:47:28 UTC
Earliest release date
2025-12-14

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C594A
  • A641G
  • T754A
  • C952T
  • C1012T
  • G1050A
  • G1233A
  • A1314G
  • T1359C
  • G1368A
  • T1413C
  • A1533G
  • A1539G
  • C1788T
  • A1797G
  • C1806T
  • C2028T
  • T2165C
    • Deletions
    4592, 15053
    Insertions
    ins_7586:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    G

  • G:H67N
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T137A
  • G:L142S
  • G:G224E
  • G:K240R
  • G:S243I
  • G:G254R
  • G:I265L
  • G:P274L
  • G:Y280H
  • G:D284G
  • G:E287D
  • G:S294P
  • G:P298L
  • G:V303I
  • G:Y304H
  • G:T319S

    • L

  • L:I59V
  • L:P171L
  • L:K175R
  • L:R256K
  • L:V379I
  • L:L1438Q
  • L:K1589R
  • L:Y1590H
  • L:S1593N
  • L:H1599R
  • L:N1723S
  • L:E1725G
  • L:G1731N

    • M

  • M:M254I

    • M2-1

  • M2-1:I132T
  • M2-1:S176P

    • M2-2

  • M2-2:Y24C

    • N

  • N:V352A

    • NS2

  • NS2:I15V

    • P

  • P:L55P
  • P:T69A
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue