PP_004EUH7.1

Display Name: USA/PP_004EUH7.1/2025-11-19
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels & S. Namugenyi

Sample details

Collection date
2025-11-19
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-03249

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-17 20:39insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-12-14
NCBI update date
2025-12-14
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15142
Completeness
95.47%
# of SNPs
135
# of inserted bases
5
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
605
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX673657.1
Submitting group
Date submitted
2025-12-17 20:39:21 UTC
Date released
2025-12-17 20:47:08 UTC
Earliest release date
2025-12-14

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A131G
  • T334C
  • T367C
  • A492G
  • G513T
  • G547A
  • G579A
  • A590G
  • C666T
  • C673T
  • G1385A
  • A1462G
  • T1555C
  • G1732A
  • T1846C
  • T1882C
  • C2074T
  • C2198T
    • Deletions
    973
    Insertions
    ins_4586:A, ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:S211N

    • G

  • G:A74V
  • G:R98K
  • G:S100G
  • G:P214S
  • G:P221L
  • G:H257Y
  • G:R260K

    • L

  • L:K260R
  • L:I445V
  • L:K570R
  • L:K1325R
  • L:N1662T
  • L:K1704N
  • L:E1738K
  • L:R1759K
  • L:I1834V
  • L:T1987I

    • M

  • M:T89I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F
  • M2-2:H53R

    • N

  • N:V97I

    • NS1

  • NS1:I93T
  • NS1:L104P

    • NS2

  • NS2:T3A
  • NS2:T28I

    • P

  • P:D229G
    • Deletions
    None
    Insertions
    None

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