PP_004EMCR.1

Display Name: Australia/PP_004EMCR.1/2025-07-27
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

Sample details

Collection date
2025-07-27
Country
Australia
Admin level 1
Victoria
City
Melbourne
GISAID Isolate ID
EPI_ISL_20254469

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-17 01:39clydeOPEN
Data use terms URL

Lineage

Lineage
A.D.1.10

Authors

Author affiliations
WHO Collaborating Centre for Reference and Research on Influenza

Host

Host name - common
Human
Host gender
Male

Alignment and QC metrics

Length
15217
Completeness
99.93%
# of SNPs
232
# of inserted bases
4
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
hRSV/A/Australia/VIC-MMC-0266/2025
Submitting group
Date submitted
2025-12-17 01:39:47 UTC
Date released
2025-12-17 01:41:23 UTC
Earliest release date
2025-12-17

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T59A
  • T66A
  • A67G
  • C75T
  • C90T
  • C183T
  • G198A
  • T246A
  • A399G
  • G551A
  • G555A
  • C609T
  • T659C
  • G664A
  • A688G
  • T697C
  • G1000A
  • C1012T
    • Deletions
    4592
    Insertions
    ins_0:TTGC

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:C21Y
  • F:S377N

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:A116V
  • G:I134K
  • G:L142S
  • G:D214G
  • G:G224E
  • G:V225A
  • G:P234L
  • G:S243I
  • G:L247P
  • G:K262E
  • G:I265L
  • G:G272N
  • G:D284G
  • G:Y297H
  • G:Y304H
  • G:T320A
  • G:K321E

    • L

  • L:R114K
  • L:N143D
  • L:P171L
  • L:T179S
  • L:S240N
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:I1656V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:N1748S
  • L:S1789F
  • L:F1851L
  • L:Y2163N

    • M

  • M:M43I
  • M:R170K

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N

    • N

  • N:Y216H
  • N:V352A

    • NS2

  • NS2:T4I

    • P

  • P:L55P
  • P:T72I
  • P:E115G

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None

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