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PP_004EM39.1
Download
Download FASTA
Download metadata TSV
Display Name: Australia/PP_004EM39.1/2025-07-21
Xiaomin Dong,
Steven Edwards,
Yi Mo Deng,
Ian Barr,
Arada Hirankitti &
Clyde Dapat
Sample details
Collection date
2025-07-21
Country
Australia
Admin level 1
Northern Territory
City
Darwin
GISAID Isolate ID
EPI_ISL_20254450
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-12-17 01:39
clyde
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
A.D.1.5
Authors
Author affiliations
WHO Collaborating Centre for Reference and Research on Influenza
Host
Host name - common
Human
Host gender
Female
Alignment and QC metrics
Length
15217
Completeness
99.93%
# of SNPs
233
# of inserted bases
5
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0
Submission details
Submission ID
hRSV/A/Australia/NT-RDH-0286/2025
Submitting group
whoflu
Date submitted
2025-12-17 01:39:47 UTC
Date released
2025-12-17 01:41:23 UTC
Earliest release date
2025-12-17
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
A
36
G
T
66
A
A
67
G
C
90
T
C
183
T
G
198
A
A
321
G
A
351
G
A
532
C
G
551
A
C
622
T
G
664
A
T
697
C
A
748
G
T
928
C
G
1000
A
C
1012
T
T
1019
C
Show more
Deletions
4592, 7555
Insertions
ins_0:TTGC, ins_2299:A
Amino acid mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
F
F:
A
16
T
F:
V
127
I
F:
S
377
N
F:
I
384
V
G
G:
A
57
T
G:
A
65
V
G:
P
71
L
G:
H
90
Y
G:
S
100
N
G:
L
101
F
G:
I
134
K
G:
L
142
S
G:
G
224
V
G:
S
243
I
G:
K
262
E
G:
I
265
L
G:
D
284
G
G:
S
294
P
G:
Y
304
H
G:
T
319
I
G:
T
320
A
L
L:
N
143
D
L:
P
171
L
L:
T
179
S
L:
R
256
K
L:
Y
598
H
L:
M
1225
I
L:
L
1438
Q
L:
I
1653
V
L:
K
1661
N
L:
V
1721
I
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
M
M:
M
43
I
M2-1
M2-1:
N
174
S
M2-1:
S
176
P
M2-1:
T
180
A
M2-2
M2-2:
Y
24
C
M2-2:
S
44
N
N
N:
V
352
A
P
P:
L
55
P
P:
V
73
I
Deletions
None
Insertions
None
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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