PP_004ELQ1.1

Display Name: Australia/PP_004ELQ1.1/2025-08-13
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

Sample details

Collection date
2025-08-13
Country
Australia
Admin level 1
Northern Territory
City
Darwin
GISAID Isolate ID
EPI_ISL_20254402

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-17 01:39clydeOPEN
Data use terms URL

Lineage

Lineage
A.D.3

Authors

Author affiliations
WHO Collaborating Centre for Reference and Research on Influenza

Host

Host name - common
Human
Host gender
Male

Alignment and QC metrics

Length
15221
Completeness
99.93%
# of SNPs
224
# of inserted bases
8
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
hRSV/A/Australia/NT-RDH-0321/2025
Submitting group
Date submitted
2025-12-17 01:39:47 UTC
Date released
2025-12-17 01:41:23 UTC
Earliest release date
2025-12-17

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T59C
  • T66A
  • A67G
  • C90T
  • A144G
  • C183T
  • C411T
  • G587T
  • C604T
  • T667C
  • A992G
  • A993G
  • C994T
  • C1012T
  • G1034A
  • G1050A
  • G1075A
  • G1077A
    • Deletions
    4592
    Insertions
    ins_0:TTGC, ins_3154:A, ins_3213:A, ins_15115:GT

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I
  • F:K271R
  • F:E356D

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:V225A
  • G:L226P
  • G:N237K
  • G:S243T
  • G:T249N
  • G:S250P
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L

    • L

  • L:K76R
  • L:P171L
  • L:T179A
  • L:D183N
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:D1644E
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:I1780V
  • L:N2111D

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

    • N

  • N:Y216H
  • N:V352A

    • P

  • P:L55P
  • P:T92M

    • SH

  • SH:V49A
    • Deletions
    None
    Insertions
    None

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