PP_004EL48.1

Display Name: Australia/PP_004EL48.1/2025-09-10
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

Sample details

Collection date
2025-09-10
Country
Australia
Admin level 1
Northern Territory
City
Darwin
GISAID Isolate ID
EPI_ISL_20254359

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-17 01:39clydeOPEN
Data use terms URL

Lineage

Lineage
A.D.3.7

Authors

Author affiliations
WHO Collaborating Centre for Reference and Research on Influenza

Host

Host name - common
Human
Host gender
Female

Alignment and QC metrics

Length
15225
Completeness
99.93%
# of SNPs
233
# of inserted bases
12
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
hRSV/A/Australia/NT-RDH-0338/2025
Submitting group
Date submitted
2025-12-17 01:39:47 UTC
Date released
2025-12-17 01:41:23 UTC
Earliest release date
2025-12-17

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C55T
  • T59C
  • T66A
  • A67G
  • G74A
  • C90T
  • C183T
  • T231C
  • G587T
  • T619C
  • G637A
  • A970G
  • C990T
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • A1080G
    • Deletions
    4592
    Insertions
    ins_0:TTGC, ins_2297:A, ins_15053:CAAAAA, ins_15115:T

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I
  • F:V533I

    • G

  • G:H67N
  • G:P71L
  • G:T80M
  • G:H90Y
  • G:L101F
  • G:G106R
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151Q
  • G:N178G
  • G:K221R
  • G:G224E
  • G:N237K
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:D1644E
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:R2117K

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

    • N

  • N:V352A

    • NS1

  • NS1:G2D

    • P

  • P:L55P
  • P:K76R
  • P:T92M
    • Deletions
    None
    Insertions
    None

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