PP_004DPQ0.1

Display Name: Tanzania/PP_004DPQ0.1/2025-01
L. A. Mapunda, M. Beyanga, N. Moremi, J. N. Hakizimana, D. Kamori, A. Chacha, E. Mgimba, D. Mrosso, A. E. Mwafulango, J. Mushumbusi, F. Ndunguru, S. Abdul, E. Mkumbo, M. E. Kelly, V. Mmbaga, R. Kishimba, S. Laizer, N. Kapologwe, M. Kiremeji, E. Sylvanus, A. Samwel, S. Nungu, E. Achol, H. I. Lagu, ..., G. Magembe

Sample details

Collection date
2025-01
Country
Tanzania
Isolate name
MARV_H.Sapiens_TZ_Kagera_002_2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 11:23insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
MARV.B.2

Authors

Author affiliations
National Public Health Laboratory, Ministry of Health

INSDC

INSDC accession
NCBI release date
2025-11-27
NCBI update date
2025-11-27

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
19030
Completeness
99.57%
# of SNPs
1448
# of inserted bases
2
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PV700538.1
Submitting group
Date submitted
2025-11-28 11:23:32 UTC
Date released
2025-11-28 11:29:30 UTC
Earliest release date
2025-11-27

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • T109C
  • C115T
  • G124A
  • C142T
  • A169G
  • C205T
  • C256T
  • G265A
  • G277T
  • G289A
  • G310A
  • G340A
  • C343T
  • T367C
  • T415C
  • C433T
  • G460A
  • T499C
    • Deletions
    None
    Insertions
    ins_18683:A, ins_18872:G

    Amino acid mutations

    Mutations called relative to the NC_001608.3 reference

    Substitutions

    GP

  • GP:K2R
  • GP:L7F
  • GP:T16I
  • GP:N18T
  • GP:N28D
  • GP:I113V
  • GP:A214T
  • GP:A227T
  • GP:I231T
  • GP:P234S
  • GP:L235P
  • GP:R239H
  • GP:E241G
  • GP:L244P
  • GP:K253R
  • GP:D258N
  • GP:S260N
  • GP:A267T

    • L

  • L:I17V
  • L:A115T
  • L:S128P
  • L:K174R
  • L:V189I
  • L:I214V
  • L:Q282Y
  • L:H335C
  • L:Q342R
  • L:V359I
  • L:S398A
  • L:E536D
  • L:D653N
  • L:E947G
  • L:S957A
  • L:K981R
  • L:R1018K
  • L:E1143K

    • NP

  • NP:M428V
  • NP:E448G
  • NP:G481S
  • NP:P493S
  • NP:R495G
  • NP:N501D
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y
  • NP:N654S
  • NP:I660V

    • VP24

  • VP24:N17K
  • VP24:H48R
  • VP24:V214I

    • VP30

  • VP30:V15A
  • VP30:T16I
  • VP30:T18S
  • VP30:H30N
  • VP30:Y34H
  • VP30:A48T
  • VP30:A88T
  • VP30:P90L
  • VP30:T121A
  • VP30:R123K
  • VP30:S159N
  • VP30:M201I
  • VP30:V246I

    • VP35

  • VP35:R70K
  • VP35:T94V

    • VP40

  • VP40:Q37H
  • VP40:V57I
  • VP40:V195I
  • VP40:N269S
  • VP40:V303I
    • Deletions
    None
    Insertions
    None

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