PP_004DPKA.1

Display Name: Rwanda/PP_004DPKA.1/2024-09-30
C. M. Muvunyi, Y. Butera, L. Mutesa, C. Happi, R. Muvunyi, J. P. Musabyimana, E. Parker, E. Umumararungu, N. Gahima & J. Rwabuhihi

Sample details

Collection date
2024-09-30
Country
Rwanda
Isolate name
MARV_RW_OCT_2024_C034_2024_09_30

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 11:23insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
MARV.B.2

Authors

Author affiliations
Rwanda Biomedical Centre, Director General

INSDC

INSDC accession
NCBI release date
2024-11-06
NCBI update date
2024-11-06

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
18293
Completeness
74.48%
# of SNPs
805
# of inserted bases
1
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
4059
# of frame shifts
1
# of stop codons
0
Frame shifts
L:2333(nt:18476)

Submission details

Submission ID
PQ552739.1
Submitting group
Date submitted
2025-11-28 11:23:32 UTC
Date released
2025-11-28 11:29:30 UTC
Earliest release date
2024-11-06

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • G310A
  • G340A
  • C343T
  • T367C
  • T415C
  • C433T
  • G460A
  • T499C
  • A502G
  • C520T
  • A547G
  • G583A
  • G595A
  • G598A
  • C601T
  • T619C
  • C628T
  • C634T
    • Deletions
    None
    Insertions
    ins_18475:N

    Amino acid mutations

    Mutations called relative to the NC_001608.3 reference

    Substitutions

    GP

  • GP:T16I
  • GP:N18T
  • GP:N28D
  • GP:I113V
  • GP:A214T
  • GP:A227T
  • GP:A267T
  • GP:R276Q
  • GP:H279D
  • GP:S303G
  • GP:V319A
  • GP:P418S
  • GP:P419S
  • GP:S422N
  • GP:A425T
  • GP:V429I
  • GP:V547G
  • GP:K618R

    • L

  • L:I17V
  • L:A115T
  • L:S128P
  • L:V189I
  • L:I214V
  • L:Q282Y
  • L:H335C
  • L:Q342R
  • L:V359I
  • L:S398A
  • L:E536D
  • L:D653N
  • L:E947G
  • L:S957A
  • L:E1143K
  • L:S1161P
  • L:D1162E
  • L:K1164E

    • NP

  • NP:M428V
  • NP:E448G
  • NP:G481S
  • NP:P493S
  • NP:R495G
  • NP:N501D
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y
  • NP:N654S
  • NP:I660V

    • VP24

  • VP24:N17K
  • VP24:H48R
  • VP24:V214I

    • VP30

  • VP30:P90L
  • VP30:S159N
  • VP30:M201I

    • VP35

  • VP35:R70K
  • VP35:T94V
  • VP35:R285K

    • VP40

  • VP40:Q37H
  • VP40:V57I
  • VP40:Q159R
  • VP40:V195I
  • VP40:N269S
  • VP40:N284H
    • Deletions
    None
    Insertions
    None

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