PP_004DPAV.1

Display Name: Rwanda/PP_004DPAV.1/2024-09-25
C. M. Muvunyi, Y. Butera, L. Mutesa, C. Happi, R. Muvunyi, J. P. Musabyimana, E. Parker, E. Umumararungu, N. Gahima & J. Rwabuhihi

Sample details

Collection date
2024-09-25
Country
Rwanda
Isolate name
MARV_RW_OCT_2024_C002_2024_09_25

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 11:23insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
MARV.B.2

Authors

Author affiliations
Rwanda Biomedical Centre, Director General

INSDC

INSDC accession
NCBI release date
2024-11-06
NCBI update date
2024-11-06

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
18451
Completeness
88.07%
# of SNPs
1095
# of inserted bases
1
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
1619
# of frame shifts
1
# of stop codons
0
Frame shifts
L:2333(nt:18476)

Submission details

Submission ID
PQ552730.1
Submitting group
Date submitted
2025-11-28 11:23:32 UTC
Date released
2025-11-28 11:29:30 UTC
Earliest release date
2024-11-06

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • C142T
  • A169G
  • C205T
  • C256T
  • G265A
  • G277T
  • G289A
  • G310A
  • G340A
  • C343T
  • T367C
  • T415C
  • C433T
  • G460A
  • T499C
  • A502G
  • C520T
  • A547G
    • Deletions
    None
    Insertions
    ins_18475:N

    Amino acid mutations

    Mutations called relative to the NC_001608.3 reference

    Substitutions

    GP

  • GP:K2R
  • GP:L7F
  • GP:T16I
  • GP:N18T
  • GP:N28D
  • GP:I113V
  • GP:A214T
  • GP:A227T
  • GP:I231T
  • GP:P234S
  • GP:L235P
  • GP:R239H
  • GP:D258N
  • GP:S260N
  • GP:A267T
  • GP:R276Q
  • GP:H279D
  • GP:S303G

    • L

  • L:I17V
  • L:A115T
  • L:S128P
  • L:V189I
  • L:I214V
  • L:Q282Y
  • L:H335C
  • L:Q342R
  • L:V359I
  • L:S398A
  • L:E536D
  • L:D653N
  • L:E947G
  • L:S957A
  • L:K981R
  • L:E1143K
  • L:S1161P
  • L:D1162E

    • NP

  • NP:M428V
  • NP:E448G
  • NP:G481S
  • NP:P493S
  • NP:R495G
  • NP:N501D
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y
  • NP:N654S
  • NP:I660V

    • VP24

  • VP24:N17K
  • VP24:H48R
  • VP24:V214I

    • VP30

  • VP30:V15A
  • VP30:T16I
  • VP30:T18S
  • VP30:H30N
  • VP30:Y34H
  • VP30:A48T
  • VP30:A88T
  • VP30:P90L
  • VP30:T121A
  • VP30:R123K
  • VP30:S159N
  • VP30:M201I

    • VP35

  • VP35:R70K
  • VP35:T94V
  • VP35:R285K

    • VP40

  • VP40:Q37H
  • VP40:V57I
  • VP40:Q159R
  • VP40:V195I
  • VP40:N269S
  • VP40:N284H
  • VP40:V303I
    • Deletions
    None
    Insertions
    None

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