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PP_004DP71.1
Download
Download FASTA
Download metadata TSV
Display Name: Rwanda/PP_004DP71.1/2024-09-26
C. M. Muvunyi,
Y. Butera,
L. Mutesa,
C. Happi,
R. Muvunyi,
J. P. Musabyimana,
E. Parker,
E. Umumararungu,
N. Gahima &
J. Rwabuhihi
Sample details
Collection date
2024-09-26
Country
Rwanda
Isolate name
MARV_RW_OCT_2024_C018_2024_09_26
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-28 11:23
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
MARV.B.2
Authors
Author affiliations
Rwanda Biomedical Centre, Director General
INSDC
INSDC accession
PQ552727.1
NCBI release date
2024-11-06
NCBI update date
2024-11-06
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics
Length
18556
Completeness
91.74%
# of SNPs
1177
# of inserted bases
1
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
1023
# of frame shifts
1
# of stop codons
0
Frame shifts
L:2333(nt:18476)
Submission details
Submission ID
PQ552727.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-28 11:23:32 UTC
Date released
2025-11-28 11:29:30 UTC
Earliest release date
2024-11-06
Nucleotide mutations
Mutations called relative to the
NC_001608.3
reference
Substitutions
T
109
C
C
115
T
G
124
A
C
142
T
A
169
G
C
205
T
C
256
T
G
265
A
G
277
T
G
289
A
G
310
A
G
340
A
C
343
T
T
367
C
T
415
C
C
433
T
G
460
A
T
499
C
Show more
Deletions
None
Insertions
ins_18475:N
Amino acid mutations
Mutations called relative to the
NC_001608.3
reference
Substitutions
GP
GP:
K
2
R
GP:
L
7
F
GP:
T
16
I
GP:
N
18
T
GP:
N
28
D
GP:
I
113
V
GP:
A
214
T
GP:
A
227
T
GP:
I
231
T
GP:
P
234
S
GP:
L
235
P
GP:
R
239
H
GP:
L
244
P
GP:
K
253
R
GP:
D
258
N
GP:
S
260
N
GP:
A
267
T
GP:
R
276
Q
Show more
L
L:
I
17
V
L:
A
115
T
L:
S
128
P
L:
V
189
I
L:
I
214
V
L:
Q
282
Y
L:
H
335
C
L:
Q
342
R
L:
V
359
I
L:
S
398
A
L:
E
536
D
L:
D
653
N
L:
E
947
G
L:
S
957
A
L:
K
981
R
L:
R
1018
K
L:
E
1143
K
L:
S
1161
P
Show more
NP
NP:
M
428
V
NP:
E
448
G
NP:
G
481
S
NP:
P
493
S
NP:
R
495
G
NP:
N
501
D
NP:
N
578
S
NP:
P
579
S
NP:
M
612
A
NP:
D
625
Y
NP:
N
654
S
NP:
I
660
V
VP24
VP24:
N
17
K
VP24:
H
48
R
VP24:
V
214
I
VP30
VP30:
V
15
A
VP30:
T
16
I
VP30:
T
18
S
VP30:
H
30
N
VP30:
Y
34
H
VP30:
A
48
T
VP30:
A
88
T
VP30:
P
90
L
VP30:
T
121
A
VP30:
R
123
K
VP30:
S
159
N
VP30:
M
201
I
VP35
VP35:
R
70
K
VP35:
T
94
V
VP35:
R
285
K
VP40
VP40:
Q
37
H
VP40:
V
57
I
VP40:
Q
159
R
VP40:
V
195
I
VP40:
N
269
S
VP40:
N
284
H
VP40:
V
303
I
Deletions
None
Insertions
None
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