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PP_004DNWP.1
Download
Download FASTA
Download metadata TSV
Display Name: South_Africa/PP_004DNWP.1/2017
J. T. Paweska,
N. Storm,
W. Markotter,
N. Di Paola,
M. R. Wiley,
G. Palacios &
P. Jansen van Vuren
Sample details
Collection date
2017
Country
South Africa
Isolate name
8095
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-28 11:23
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
RAVV.2
Authors
Author affiliations
Commonwealth Scientific and Industrial Research Organisation, Australian Animal Health Laboratory, Health and Biosecurity
INSDC
INSDC accession
MT321489.1
NCBI release date
2020-12-04
NCBI update date
2020-12-04
Host
Host taxon ID
9407
Host name - scientific
Rousettus aegyptiacus
Alignment and QC metrics
Length
18692
Completeness
79.16%
# of SNPs
3170
# of inserted bases
3
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
3561
# of frame shifts
0
# of stop codons
0
Submission details
Submission ID
MT321489.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-28 11:23:32 UTC
Date released
2025-11-28 11:29:30 UTC
Earliest release date
2020-12-04
Nucleotide mutations
Mutations called relative to the
NC_001608.3
reference
Substitutions
T
241
C
C
245
T
T
247
A
C
256
T
C
257
T
A
259
G
G
265
C
T
268
C
C
272
T
G
277
A
G
280
A
G
289
A
C
295
T
T
298
C
A
299
T
T
307
C
G
310
A
C
322
T
Show more
Deletions
11341
Insertions
ins_18477:C, ins_18802:A, ins_18873:G
Amino acid mutations
Mutations called relative to the
NC_001608.3
reference
Substitutions
GP
GP:
T
4
I
GP:
C
5
Y
GP:
T
111
S
GP:
I
122
V
GP:
I
149
V
GP:
K
176
R
GP:
G
203
E
GP:
Q
205
R
GP:
T
206
R
GP:
A
214
I
GP:
A
227
P
GP:
K
230
L
GP:
I
231
K
GP:
P
234
S
GP:
A
238
V
GP:
R
239
T
GP:
E
241
S
GP:
K
243
H
Show more
L
L:
A
25
T
L:
H
47
Y
L:
A
115
V
L:
Y
116
F
L:
G
122
R
L:
V
126
A
L:
S
128
T
L:
A
129
N
L:
R
132
K
L:
S
133
L
L:
T
178
V
L:
V
195
I
L:
I
231
V
L:
V
234
I
L:
L
262
V
L:
S
265
N
L:
D
266
E
L:
G
267
E
Show more
NP
NP:
N
66
Y
NP:
A
94
P
NP:
D
101
E
NP:
W
173
G
NP:
T
245
A
NP:
V
396
A
NP:
R
407
Q
NP:
S
411
P
NP:
V
419
L
NP:
P
427
S
NP:
M
428
I
NP:
D
440
N
NP:
S
446
T
NP:
T
447
E
NP:
D
474
E
NP:
D
475
N
NP:
I
479
A
NP:
G
481
S
Show more
VP24
VP24:
A
12
T
VP24:
V
14
I
VP24:
I
19
V
VP24:
I
30
V
VP24:
V
46
I
VP24:
N
74
S
VP24:
I
88
M
VP30
VP30:
T
10
N
VP30:
N
12
S
VP30:
T
16
A
VP30:
P
17
L
VP30:
T
18
S
VP30:
I
19
T
VP30:
Y
20
H
VP30:
T
23
N
VP30:
H
30
Q
VP30:
T
32
I
VP30:
Y
34
H
VP30:
A
48
T
VP30:
S
50
G
VP30:
I
56
A
VP30:
P
57
S
VP30:
P
62
L
VP30:
T
145
A
VP30:
R
240
K
Show more
VP35
VP35:
A
27
T
VP35:
M
52
I
VP35:
A
55
S
VP35:
I
62
V
VP35:
Q
65
R
VP35:
R
70
K
VP35:
I
83
M
VP35:
V
93
M
VP35:
R
96
K
VP35:
E
106
D
VP35:
L
111
V
VP35:
R
115
K
VP35:
C
175
Y
VP35:
K
177
Q
VP35:
G
178
K
VP35:
A
184
Q
VP35:
V
279
A
VP35:
R
285
K
VP40
VP40:
Q
37
H
VP40:
I
146
V
VP40:
R
180
C
VP40:
I
197
V
VP40:
N
222
K
VP40:
N
269
G
Deletions
None
Insertions
None
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