PP_004DN1E.1

Display Name: Canada/PP_004DN1E.1/2017-07
G. Wong, W. G. Cao, S. H. He, Z. R. Zhang, W. J. Zhu, E. Moffat, H. Ebihara, C. Embury-Hyatt, X. G. Qiu, G. Wang, W. Cao, S. He, Z. Zhang, W. Zhu & X. Qiu

Sample details

Collection date
2017-07
Country
Canada

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 11:23insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
MARV.A.3

Authors

Author affiliations
Public Health Agency of Canada, Special Pathogens Program, National Microbiology Laboratory

INSDC

INSDC accession
NCBI release date
2018-06-05
NCBI update date
2018-06-05

Host

Host taxon ID
Host name - scientific
Cavia porcellus
Is lab host
True

Alignment and QC metrics

Length
19114
Completeness
100.00%
# of SNPs
1307
# of inserted bases
3
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
MF939097.1
Submitting group
Date submitted
2025-11-28 11:23:32 UTC
Date released
2025-11-28 11:29:30 UTC
Earliest release date
2018-06-05

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • C115T
  • G124A
  • G127A
  • C142T
  • C148T
  • A169G
  • T181C
  • C256T
  • G289A
  • T292C
  • T304C
  • T307C
  • G310A
  • G337A
  • G340A
  • A346G
  • C358T
  • T412C
    • Deletions
    None
    Insertions
    ins_18681:G, ins_18872:G, ins_19111:A

    Amino acid mutations

    Mutations called relative to the NC_001608.3 reference

    Substitutions

    GP

  • GP:F6L
  • GP:T16V
  • GP:N18T
  • GP:N28I
  • GP:T74A
  • GP:A214T
  • GP:I231K
  • GP:P233L
  • GP:R239H
  • GP:I242V
  • GP:P248S
  • GP:S260N
  • GP:A267T
  • GP:R276Q
  • GP:H279Y
  • GP:V285A
  • GP:D317G
  • GP:A318V

    • L

  • L:D124N
  • L:S128P
  • L:A129T
  • L:I214V
  • L:H335C
  • L:D336C
  • L:V359I
  • L:E536D
  • L:I757V
  • L:S957A
  • L:K981R
  • L:E1143K
  • L:S1163A
  • L:K1164E
  • L:L1169F
  • L:E1180G
  • L:A1364S
  • L:N1374S

    • NP

  • NP:M428I
  • NP:D440S
  • NP:G481S
  • NP:L500I
  • NP:N501D
  • NP:P514L
  • NP:Q518P
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y

    • VP24

  • VP24:A12V
  • VP24:N17K
  • VP24:V66I
  • VP24:N242S

    • VP30

  • VP30:V15A
  • VP30:T18S
  • VP30:Y34H
  • VP30:A88T
  • VP30:M201I

    • VP35

  • VP35:A27T
  • VP35:I67V
  • VP35:K69R
  • VP35:R70K
  • VP35:M180T

    • VP40

  • VP40:N56K
  • VP40:I197V
    • Deletions
    None
    Insertions
    None

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