PP_004DMUU.1

Display Name: USA/PP_004DMUU.1/2013
A. Marzi, L. Banadyga, E. Haddock, T. Thomas, K. Shen, E. J. Horne, D. P. Scott, H. Feldmann, H. Ebihara, E. Dahlstrom, S. Anzick, S. Ricklefs & S. Porcella

Sample details

Collection date
2013
Country
USA
Isolate name
Marburg virus/RML-IRF/M.auratus-lab/AGO/2005/Angola-368-HA

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 11:23insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
MARV.A.3

Authors

Author affiliations
Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Laboratory of Virology

INSDC

INSDC accession
NCBI release date
2016-12-28
NCBI update date
2016-12-28

Host

Host taxon ID
Host name - scientific
Mesocricetus auratus

Alignment and QC metrics

Length
19025
Completeness
99.53%
# of SNPs
1354
# of inserted bases
3
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
KY047764.1
Submitting group
Date submitted
2025-11-28 11:23:32 UTC
Date released
2025-11-28 11:29:30 UTC
Earliest release date
2016-12-28

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • A90T
  • T91A
  • A92T
  • T93C
  • C115T
  • G124A
  • G127A
  • C142T
  • C148T
  • A169G
  • T181C
  • C256T
  • G289A
  • T292C
  • T304C
  • T307C
  • G310A
  • G337A
    • Deletions
    None
    Insertions
    ins_18681:G, ins_18872:G, ins_19111:A

    Amino acid mutations

    Mutations called relative to the NC_001608.3 reference

    Substitutions

    GP

  • GP:F6L
  • GP:T16V
  • GP:N18T
  • GP:N28I
  • GP:T74A
  • GP:A214T
  • GP:I231K
  • GP:P233L
  • GP:R239H
  • GP:I242V
  • GP:P248S
  • GP:S260N
  • GP:A267T
  • GP:R276Q
  • GP:H279Y
  • GP:V285A
  • GP:D317G
  • GP:A318V

    • L

  • L:D124N
  • L:S128P
  • L:A129T
  • L:I214V
  • L:H335C
  • L:D336C
  • L:V359I
  • L:E536D
  • L:I757V
  • L:S957A
  • L:K981R
  • L:E1143K
  • L:S1163A
  • L:K1164E
  • L:L1169F
  • L:E1180G
  • L:A1364S
  • L:N1374S

    • NP

  • NP:M428I
  • NP:D440S
  • NP:G481S
  • NP:L500I
  • NP:N501D
  • NP:P514L
  • NP:Q518P
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y

    • VP24

  • VP24:A12V
  • VP24:N17K

    • VP30

  • VP30:V15A
  • VP30:T18S
  • VP30:Y34H
  • VP30:A88T
  • VP30:M201I

    • VP35

  • VP35:A27T
  • VP35:L33P
  • VP35:I67V
  • VP35:K69R
  • VP35:R70K
  • VP35:M180T

    • VP40

  • VP40:G106D
  • VP40:D184N
  • VP40:I197V
    • Deletions
    None
    Insertions
    None

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