PP_004DLDS.1

Display Name: Uganda/PP_004DLDS.1/2012
C. G. Albarino, T. Shoemaker, M. L. Khristova, J. F. Wamala, J. J. Muyembe, S. Balinandi, A. Tumusiime, S. Campbell, D. Cannon, A. Gibbons, E. Bergeron, B. Bird, K. Dodd, C. Spiropoulou, B. R. Erickson, L. Guerrero, B. Knust, S. T. Nichol, P. E. Rollin, U. Stroher & M. Khristova

Sample details

Collection date
2012
Country
Uganda
Isolate name
Mbg-422-2012

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 11:23insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
MARV.A.1

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

INSDC

INSDC accession
NCBI release date
2013-05-19
NCBI update date
2013-06-24

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
19114
Completeness
100.00%
# of SNPs
1173
# of inserted bases
3
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
KC545387.1
Submitting group
Date submitted
2025-11-28 11:23:32 UTC
Date released
2025-11-28 11:28:29 UTC
Earliest release date
2013-05-19

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • A46G
  • G101A
  • C115T
  • T118C
  • G124A
  • A169G
  • C256T
  • G289A
  • T304C
  • G310A
  • G337A
  • A346G
  • A364G
  • C397T
  • C433T
  • C443T
  • A445G
  • A502G
    • Deletions
    None
    Insertions
    ins_18681:G, ins_18877:A, ins_19111:A

    Amino acid mutations

    Mutations called relative to the NC_001608.3 reference

    Substitutions

    GP

  • GP:F6L
  • GP:L7F
  • GP:S9G
  • GP:G15R
  • GP:T16I
  • GP:N18T
  • GP:V33M
  • GP:K158R
  • GP:S201N
  • GP:P233S
  • GP:A238T
  • GP:P240S
  • GP:L244P
  • GP:K253A
  • GP:S260N
  • GP:A267T
  • GP:R276Q
  • GP:L290F

    • L

  • L:Y85H
  • L:S128P
  • L:A131T
  • L:V189I
  • L:I214V
  • L:H335C
  • L:D336S
  • L:L341F
  • L:D345G
  • L:V359I
  • L:T399V
  • L:R443K
  • L:E536D
  • L:N761D
  • L:N887S
  • L:S957A
  • L:K981R
  • L:E1143K

    • NP

  • NP:V334I
  • NP:R407Q
  • NP:M428I
  • NP:D440N
  • NP:G481S
  • NP:G489R
  • NP:A564T
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y

    • VP24

  • VP24:N17K
  • VP24:I190V

    • VP30

  • VP30:V15A
  • VP30:P17S
  • VP30:T18S
  • VP30:Y34H
  • VP30:S63P
  • VP30:A88T
  • VP30:P125L
  • VP30:S159N
  • VP30:M201I
  • VP30:I262T
  • VP30:S276N
  • VP30:G278S

    • VP35

  • VP35:I62V
  • VP35:R70K
  • VP35:S91N
  • VP35:A184E
    • Deletions
    None
    Insertions
    None

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