PP_004DD1P.1

Display Name: Sierra_Leone/PP_004DD1P.1/2017-11-14

Sample details

Collection date
2017-11-14
Country
Sierra Leone
Isolate name
PREDICT_SLAB3397

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 11:23insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
MARV.A.3

Authors

Author affiliations
University of California, Davis, One Health Institute & Karen C Drayer Wildlife Health Center, School of Veterinary Medicine

INSDC

INSDC accession
BioProject accession
NCBI release date
2022-01-26
NCBI update date
2022-01-26

Host

Host taxon ID
Host name - scientific
Rousettus aegyptiacus

Alignment and QC metrics

Length
587
Completeness
3.07%
# of SNPs
27
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
MT929356.1
Submitting group
Date submitted
2025-11-28 11:23:32 UTC
Date released
2025-11-28 11:28:29 UTC
Earliest release date
2022-01-26

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • T12626C
  • T12627C
  • T12656C
  • G12668A
  • G12674T
  • T12703A
  • A12725G
  • T12728C
  • T12797A
  • C12845T
  • T12860C
  • T12875C
  • C12899T
  • C12929T
  • T12932C
  • T12947C
  • C12950T
  • A12961G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001608.3 reference

    Substitutions

    L

  • L:F408Y
  • L:Q494R
  • L:E536D
    • Deletions
    None
    Insertions
    None

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