PP_004D8JT.1

Display Name: USA/PP_004D8JT.1/2025-07-14
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels & S. Namugenyi

Sample details

Collection date
2025-07-14
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-03182

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-23 04:39insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-11-22
NCBI update date
2025-11-22
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15137
Completeness
98.66%
# of SNPs
149
# of inserted bases
2
# of deleted bases
3
# of ambiguous bases
2
# of unknown bases
118
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX497007.1
Submitting group
Date submitted
2025-11-23 04:39:54 UTC
Date released
2025-11-23 04:47:50 UTC
Earliest release date
2025-11-22

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A49G
  • A50G
  • A276G
  • G332A
  • G513T
  • A534G
  • G579A
  • C628T
  • A843G
  • C998A
  • T1333C
  • G1385A
  • G1567A
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2554T
    • Deletions
    973, 3201, 4586
    Insertions
    ins_15092:AT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:K570R
  • L:N590S
  • L:M1741I
  • L:R1759K
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS1

  • NS1:K74E

    • NS2

  • NS2:K87R

    • P

  • P:D225N

    • SH

  • SH:I49M
    • Deletions
    None
    Insertions
    None

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