PP_004D8C6.1

Display Name: USA/PP_004D8C6.1/2025-05-13
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels & S. Namugenyi

Sample details

Collection date
2025-05-13
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-03176

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-23 04:39insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1.4

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-11-22
NCBI update date
2025-11-22
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15142
Completeness
98.65%
# of SNPs
146
# of inserted bases
6
# of deleted bases
2
# of ambiguous bases
1
# of unknown bases
120
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX497001.1
Submitting group
Date submitted
2025-11-23 04:39:54 UTC
Date released
2025-11-23 04:47:50 UTC
Earliest release date
2025-11-22

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T281C
  • T483C
  • G513T
  • T518C
  • G579A
  • A827G
  • A964G
  • C994T
  • C1018T
  • G1385A
  • G1546A
  • G1732A
  • G1768A
  • T1846C
  • C2198T
  • T2346C
  • C2521T
  • C2554T
    • Deletions
    973, 4586
    Insertions
    ins_15089:AATATA

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:F12I
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:F163S
  • G:F166L
  • G:F168P
  • G:C174R
  • G:C180R
  • G:I187T
  • G:P214S
  • G:P221L
  • G:I227T
  • G:I252T
  • G:S265P
  • G:I268T
  • G:S275P
  • G:L284I
  • G:Y285H
  • G:*311Q

    • L

  • L:S169P
  • L:K570R
  • L:R1759K
  • L:T1987I

    • M2-1

  • M2-1:I125V

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS2

  • NS2:T82A

    • P

  • P:P73S
    • Deletions
    None
    Insertions
    None

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