PP_004D88E.1

Display Name: USA/PP_004D88E.1/2025-04-28
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels & S. Namugenyi

Sample details

Collection date
2025-04-28
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-03172

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-23 04:39insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1.4

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-11-22
NCBI update date
2025-11-22
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15140
Completeness
98.65%
# of SNPs
133
# of inserted bases
4
# of deleted bases
2
# of ambiguous bases
2
# of unknown bases
119
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX496997.1
Submitting group
Date submitted
2025-11-23 04:39:54 UTC
Date released
2025-11-23 04:47:50 UTC
Earliest release date
2025-11-22

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T483C
  • G513T
  • G579A
  • A827G
  • C994T
  • C1018T
  • G1029A
  • G1385A
  • G1546A
  • G1732A
  • G1768A
  • T1846C
  • C2198T
  • T2346C
  • C2521T
  • C2554T
  • C2691T
  • A2832G
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:F12I
  • F:I79V
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:I268T
  • G:S275P
  • G:L284I
  • G:Y285H

    • L

  • L:S169P
  • L:K570R
  • L:R1759K
  • L:T1800I
  • L:A1807S
  • L:T1987I

    • M2-1

  • M2-1:I125V

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS2

  • NS2:T82A

    • P

  • P:P73S
    • Deletions
    None
    Insertions
    None

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