PP_004BRTW.1

Philippines/PP_004BRTW.1/2024-12-21
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

WHO Collaborating Centre for Reference and Research on Influenza

Sample details

Collection date
2024-12-21
Sampling location
Philippines (Alabang)
City
Muntinlupa City
GISAID Isolate ID
EPI_ISL_20224563

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.5.3

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Sampling

Sample type
Nasopharyngeal

Host

Host gender
Male

Submission details

Submission ID
hRSV/A/Philippines/RITM0025/2024
Submitting group
Date submitted
2025-10-27 04:07:00 UTC
Date released
2025-10-27 04:09:09 UTC
Earliest release date
2025-10-27

Alignment and QC

Length
15166 (99.6%)
# of SNPs
233
# of inserted bases
4
# of deleted bases
4

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • A26G
  • T66A
  • A67G
  • C90T
  • C183T
  • A201G
  • T255C
  • T459A
  • T463C
  • G664A
  • T844C
  • T886C
  • A940C
  • A1009G
  • C1012T
  • G1050A
  • T1320C
  • T1359C
Deletions
4592, 7516-7518
Insertions
ins_0:TTGC

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:L15F
  • F:K68E
  • F:T122A

G

  • G:P71L
  • G:K84R
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:P206Q
  • G:G224E
  • G:V225A
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:S270F
  • G:P276Q
  • G:V303A
  • G:Y304H
  • G:L310P
  • G:Q312R
  • G:L314P
  • G:T320A

L

  • L:S141P
  • L:P171L
  • L:T179A
  • L:R256K
  • L:Y598H
  • L:I1177M
  • L:L1438Q
  • L:K1589R
  • L:H1707Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:N1737S
  • L:R1759K
  • L:V1943D
  • L:G2080E

M2-1

  • M2-1:K52R
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:D62E

N

  • N:I104V
  • N:D204E
  • N:V352A

P

  • P:L55P
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue