PP_00463CR.1

Display Name: Australia/PP_00463CR.1/2025-05-05
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

Sample details

Collection date
2025-05-05
Country
Australia
Admin level 1
Northern Territory
City
Darwin

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-24 06:50clydeOPEN
Data use terms URL

Lineage

Lineage
A.D.1.4

Authors

Author affiliations
WHO Collaborating Centre for Reference and Research on Influenza

INSDC

INSDC accession
BioProject accession
BioSample accession

Host

Host name - common
Human
Host gender
Female

Alignment and QC metrics

Length
15215
Completeness
99.93%
# of SNPs
254
# of inserted bases
4
# of deleted bases
3
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
hRSV/A/Australia/NT-RDH0169/2025
Submitting group
Date submitted
2025-09-24 06:50:43 UTC
Date released
2025-09-24 07:09:22 UTC
Earliest release date
2025-09-24

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • A67G
  • C90T
  • C183T
  • G198A
  • G240A
  • A493G
  • A529G
  • G551A
  • C622T
  • G664A
  • T697C
  • C769T
  • C782T
  • T832C
  • C853T
  • T892C
  • G1000A
    • Deletions
    4175, 4592, 15115
    Insertions
    ins_0:TTGC

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:L3S

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:N103T
  • G:A122V
  • G:I133V
  • G:I134K
  • G:L142S
  • G:S144I
  • G:K221R
  • G:G224V
  • G:V225A
  • G:L226F
  • G:S243I
  • G:K262E
  • G:I265H
  • G:S270P
  • G:Y273H

    • L

  • L:Y74C
  • L:N143D
  • L:D146G
  • L:P171L
  • L:T179S
  • L:D183E
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:I1656T
  • L:K1661N
  • L:N1719S
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:G1735D
  • L:V1934I
  • L:I1989M
  • L:E2165D

    • M

  • M:M43I

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N
  • M2-2:H47Y

    • N

  • N:V352A

    • P

  • P:L55P
  • P:I62T
    • Deletions
    None
    Insertions
    None

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