PP_003WKFP.1

Display Name: USA/PP_003WKFP.1/2024-02-15
Jiye Kwon, Ellen de Vries, Philippe Lemey, Ke Li, Mallery Breban, Nathan Grubaugh, Verity Hill, Virginia Pitzer, Daniel Weinberger & Seth Redmond

Sample details

Collection date
2024-02-15
Country
USA
Admin level 1
Connecticut

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-23 19:42jkwonOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

Authors

Author affiliations
Department of Epidemiology of Microbial Diseases, Yale School of Public Health

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Alignment and QC metrics

Length
15136
Completeness
99.38%
# of SNPs
141
# of inserted bases
4
# of deleted bases
6
# of ambiguous bases
9
# of unknown bases
1
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
Yale-RSV-0569
Submitting group
Date submitted
2025-09-23 19:42:01 UTC
Date released
2025-09-23 19:43:08 UTC
Earliest release date
2025-09-23

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G231A
  • G513T
  • G579A
  • C998A
  • C1156T
  • G1385A
  • C1429T
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • T2331C
  • T2346C
  • C2397A
  • C2493A
  • C2554T
  • C2691T
  • G2907A
    • Deletions
    973-977, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:I64T
  • F:E110G
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:H257R
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:I56M
  • L:K570R
  • L:R1759K
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS1

  • NS1:V59I

    • SH

  • SH:I6V
    • Deletions
    None
    Insertions
    None

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