PP_003WKFP.1

USA/Yale-RSV-0569/2024-02-15
Jiye Kwon, Ellen de Vries, Philippe Lemey, Ke Li, Mallery Breban, Nathan Grubaugh, Verity Hill, Virginia Pitzer, Daniel Weinberger & Seth Redmond

Department of Epidemiology of Microbial Diseases, Yale School of Public Health

Sample details

Collection date
2024-02-15
Sampling location
USA (Connecticut)

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Submission details

Submission ID
Yale-RSV-0569
Submitting group
Date submitted
2025-09-23 19:42:01 UTC
Date released
2025-09-23 19:43:08 UTC
Earliest release date
2025-09-23

Cited in

Alignment and QC

Length
15136 (99.4%)
# of SNPs
141
# of inserted bases
4
# of deleted bases
6
# of ambiguous bases
9
# of unknown bases
1

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G231A
  • G513T
  • G579A
  • C998A
  • C1156T
  • G1385A
  • C1429T
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • T2331C
  • T2346C
  • C2397A
  • C2493A
  • C2554T
  • C2691T
  • G2907A
Deletions
973-977, 4586
Insertions
ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:I64T
  • F:E110G
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:H257R
  • G:I268T
  • G:S275P
  • G:Y285H

L

  • L:I56M
  • L:K570R
  • L:R1759K
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:V59I

SH

  • SH:I6V
Deletions
N/A
Insertions
N/A

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