PP_003SSDU.1

Display Name: France/PP_003SSDU.1/2016-03-05
D. P. Porter, Y. Guo, J. Perry, D. L. Gossage, T. R. Watkins, J. W. Chien & R. Jordan

Sample details

Collection date
2016-03-05
Country
France
Isolate name
Subject0160_Day5_F

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-11 10:43insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4

Authors

Author affiliations
Gilead Sciences, Inc., Clinical Virology

INSDC

INSDC accession
NCBI release date
2020-06-29
NCBI update date
2020-06-29

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
1716
Completeness
11.27%
# of SNPs
21
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
MT543774.1
Submitting group
Date submitted
2025-09-11 10:43:25 UTC
Date released
2025-09-11 10:48:53 UTC
Earliest release date
2020-06-29

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T5741C
  • A5780G
  • T5834C
  • A5879T
  • T5903A
  • T5948A
  • C6017T
  • C6140T
  • C6192T
  • T6193C
  • G6247A
  • G6293A
  • G6301A
  • G6329A
  • T6701C
  • C6731T
  • A6737G
  • T6839C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:K68N
  • F:L173S
  • F:R191K
  • F:M206I
  • F:R209Q
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue