PP_003SQZP.1

Display Name: New_Zealand/PP_003SQZP.1/2014-08-28
D. P. Porter, Y. Guo, J. Perry, D. L. Gossage, T. R. Watkins, J. W. Chien & R. Jordan

Sample details

Collection date
2014-08-28
Country
New Zealand
Isolate name
Subject0135_BL_F

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-11 10:43insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4

Authors

Author affiliations
Gilead Sciences, Inc., Clinical Virology

INSDC

INSDC accession
NCBI release date
2020-06-29
NCBI update date
2020-06-29

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
1725
Completeness
11.33%
# of SNPs
20
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
MT543712.1
Submitting group
Date submitted
2025-09-11 10:43:25 UTC
Date released
2025-09-11 10:48:53 UTC
Earliest release date
2020-06-29

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T5741C
  • T5762C
  • T5903A
  • T5948A
  • C6017T
  • A6161G
  • G6188A
  • C6192T
  • T6193C
  • G6247A
  • A6277G
  • G6293A
  • C6300A
  • G6301A
  • G6329A
  • T6701C
  • C6731T
  • C7067A
  • G7232A
  • T7376C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K
    • Deletions
    None
    Insertions
    None

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