PP_003RXFM.1

Restricted sequence

This sequence is only available under the Restricted Use Terms. If you make use of this data, you must follow the terms of use.
Display Name: Democratic_Republic_of_the_Congo/PP_003RXFM.1/2025-09
Adrienne Amuri-Aziza, Gradi Luakanda - Ndelemo, Jean-Claude Makangara-Cigolo, Prince Akil-Bandali, Princesse Paku-Tshambu, Sam Wilkinson, Louis Tshulo, Josh Quick, Andre Citenga, Chloe Muswamba-Kayembe, Olga Ntumba-Tshitenge, Emmanuel Lokilo-Lofiko, Fiston Cikaya-Kankolongo, Ola Rilia, Servet Kimbonza, Elisabeth Pukuta, Daniel Mukadi, Christian Ngandu, Mathias Mossoko, Gabriel Kabamba -Lungenyi, Raphael Lumembe-Numbi, Elzedeck Mabika-Bope, Patrick Mukadi, Catherine Pratt, ..., Placide Mbala-Kingebeni

Sample details

Collection date
2025-09
Collection date (lower bound)
2025-09-01
Collection date (upper bound)
2025-09-05
Sample received date
2025-09-03
Collection subdivision level 1
Kasai
Isolate name
25FHV170
Collection country
Democratic Republic of the Congo

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2025-09-05 21:28eddylusamakiRESTRICTED until 2026-09-05
Data use terms URL

Authors

Author affiliations
Institut National de Recherche Biomédicale

Host

Host name - scientific
Homo sapiens

Sequencing

Sequencing date
2025-09-03
Sequencing instrument
Gridion
Sequencing protocol
amplicon sequencing

Alignment and QC metrics

Length
18754
Total SNPs
85
Total inserted nucs
0
Total deleted nucs
1
Total ambiguous nucs
0
Total unknown nucs
588
Total frame shifts
0
Completeness
95.82%

Submission details

Submission ID
25FHV170
Submitting group
Date submitted
2025-09-05 21:28:58 UTC
Date released
2025-09-05 21:31:42 UTC
Earliest release date
2025-09-05

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • T221C
  • C287T
  • G381A
  • A388G
  • C420T
  • C464T
  • A619G
  • T764C
  • C1198T
  • A1471G
  • G1996A
  • T2019C
  • G2023A
  • G2032A
  • C2101T
  • G2242A
  • A3738G
  • T4565C
    • Deletions
    18472
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:D338N
  • GP:I544T

    • L

  • L:V79I
  • L:S479G
  • L:K937R
  • L:R1125K
  • L:M1695V
  • L:I2137V

    • NP

  • NP:I517T

    • VP24

  • VP24:M212K

    • VP35

  • VP35:N204D

    • VP40

  • VP40:I54T
  • VP40:V298A
    • Deletions
    None
    Insertions
    None

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