PP_003RR6B.1

USA/PP_003RR6B.1
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
II
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573173.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
439 (0.332%)
# of SNPs
35
# of inserted bases
3
# of deleted bases
218
# of frame shifts
4
Frame shifts
OPG118:552-570(nt:100097-100155),OPG118:581-585(nt:100186-100200),OPG118:593-594(nt:100221-100226),OPG118:631-638(nt:100335-100359)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A100057G
  • G100060A
  • A100065C
  • T100069C
  • T100070C
  • A100071G
  • T100098G
  • A100100G
  • T100108A
  • T100110G
  • G100112A
  • C100178T
  • A100180G
  • A100183G
  • C100188G
  • A100189T
  • T100190C
  • T100194G
Deletions

100072-100096, 100117-100151, 100156-100175, 100201, 100207-100220, 100227-100236, 100245-100262, 100279-100311, 100319-100334, 100345-100357, 100365-100397
Insertions

ins_100106:CC, ins_100185:A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG118

  • OPG118:I609V
  • OPG118:T611N
  • OPG118:W623V
  • OPG118:V625D

OPG119

  • OPG119:L19W
Deletions

OPG118

OPG118:571-580, OPG118:586-592, OPG118:595-607, OPG118:626-630
Insertions

OPG118

ins_OPG118:634:DESNVTIQCG

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