PP_003RR5D.1

USA/PP_003RR5D.1
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573170.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
486 (57.8%)
# of SNPs
26
# of deleted bases
113439
# of frame shifts
6
Frame shifts
OPG054:107-440(nt:34677-35680),OPG055:40-184(nt:36532-36966),OPG055:232-233(nt:36387-36391),OPG055:328-330(nt:36096-36102),OPG056:306-447(nt:37696-38120),OPG056:565-636(nt:37127-37342)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C35496T
  • C35499T
  • T36039G
  • T36040G
  • T36160G
  • C36163T
  • A36170C
  • T36535G
  • C36539T
  • A36960G
  • C36962A
  • T36965A
  • C37176T
  • A37178C
  • A37181G
  • G37222C
  • T37226C
  • G37229A
Deletions

33426-33971, 33978-35491, 35681, 35728-36036, 36046-36095, 36103-36157, 36171-36374, 36382-36386, 36392-36416, 36422-36531, 36544-36738, 36743-36954, 36967-37058, 37068-37171, 37184-37221, 37238-37336, 37343-37470, 37475-37615, 37622-37648, 37656-37695, 37705-37723, 37729-37752, 37757-38037, 38045-38101, 38109-38114, 38121-38227, 38236-47293, 47303-74358, 74368-90430, 90442-105986,...
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG055

  • OPG055:L347H

OPG056

  • OPG056:S214K
  • OPG056:V229S
  • OPG056:G231V

OPG094

  • OPG094:A195T
Deletions

OPG054

OPG054:106

OPG055

OPG055:10-39, OPG055:185-231, OPG055:234-327, OPG055:331-346

OPG056

OPG056:244-305, OPG056:448-564
Insertions
N/A

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