PP_003RQ88.1

USA/PP_003RQ88.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573097.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
435 (55.8%)
# of SNPs
13
# of deleted bases
109525
# of frame shifts
2
Frame shifts
OPG077:52-53(nt:58426-58431),OPG077:176-313(nt:57645-58059)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C57324T
  • G57466C
  • A57639G
  • T57644G
  • A57647T
  • G57652T
  • G57661T
  • C57715T
  • A57734G
  • T57745C
  • T58300C
  • T58708G
  • A167091C
Deletions

57436-57465, 57473-57575, 57581-57635, 57657, 57658, 57666-57713, 57720-57728, 57739, 57747-57841, 57845-57899, 57906-58052, 58060-58294, 58304-58425, 58432-58579, 58584-58704, 58712-135622, 135634-151001, 151008-167082
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG075

  • OPG075:D59N

OPG192

  • OPG192:K121Q
Deletions

OPG075

OPG075:12-21

OPG077

OPG077:3-51, OPG077:54-175
Insertions
N/A

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