PP_003RQ7A.1

USA/PP_003RQ7A.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
II
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573096.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
437 (0.361%)
# of SNPs
22
# of deleted bases
275
# of frame shifts
2
Frame shifts
OPG111:60-132(nt:90440-90659),OPG111:171-315(nt:90774-91209)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A90499G
  • G90503C
  • A90505T
  • A90506C
  • G90508A
  • T90526C
  • T90531C
  • A90556C
  • T90561A
  • T90562A
  • A90568C
  • T90648A
  • A90652G
  • A90654C
  • T90656C
  • G90659C
  • A90744C
  • G90745C
Deletions

90430-90439, 90445-90474, 90478-90498, 90512-90524, 90532-90555, 90570-90584, 90591-90646, 90660-90739, 90748-90773
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions
N/A
Deletions

OPG111

OPG111:56-59, OPG111:133-159, OPG111:162-170
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue