PP_003RQ2L.1

USA/PP_003RQ2L.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573083.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
485 (54.7%)
# of SNPs
6
# of deleted bases
107313

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T57462G
  • A57463T
  • G57467A
  • C57842T
  • T58004C
  • G165247C
Deletions

57468-57837, 58299-165241
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG075

  • OPG075:N12K
  • OPG075:N13H

OPG077

  • OPG077:T194A
  • OPG077:G248S

OPG190

  • OPG190:Q42H
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue