PP_003RQ0Q.1

USA/PP_003RQ0Q.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573080.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
539 (0.588%)
# of SNPs
10
# of deleted bases
620
# of frame shifts
1
Frame shifts
OPG031:222-317(nt:17878-18167)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G18429T
  • A18436G
  • T18440G
  • C18441A
  • A18443T
  • A18444G
  • A18769G
  • T18861A
  • T18932G
  • T19185C
Deletions

18168-18426, 18933-19040, 19046-19145, 19151-19182, 19190-19229, 19239-19319
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG031

  • OPG031:F129H
  • OPG031:E130S
Deletions

OPG031

OPG031:135-221
Insertions
N/A

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