PP_003RPZS.1

USA/PP_003RPZS.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573074.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
552 (2.04%)
# of SNPs
13
# of deleted bases
3480
# of frame shifts
1
# of stop codons
1
Frame shifts
OPG160:43-301(nt:140172-140948)
Stop Codons
OPG161:143

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A140774C
  • A140775C
  • A140779G
  • G140899T
  • A140941G
  • A140944T
  • A140945T
  • A141028T
  • C141072T
  • G141294A
  • A141300G
  • T141364C
  • G141530A
Deletions

140781-140892, 140901-140936, 140949-141021, 141534-144792
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG160

  • OPG160:M1I
  • OPG160:I16N

OPG161

  • OPG161:A65T
  • OPG161:K67E
  • OPG161:V88A
  • OPG161:W143*
Deletions

OPG160

OPG160:19-42
Insertions
N/A

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