PP_003RPYU.1

USA/PP_003RPYU.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573064.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
575 (12.8%)
# of SNPs
56
# of inserted bases
12
# of deleted bases
24698
# of frame shifts
2
Frame shifts
OPG063:233-281(nt:42848-42994),OPG063:303-366(nt:42593-42782)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A42426G
  • G42589A
  • A42661T
  • C42664T
  • C42674G
  • T42676C
  • A42679C
  • T42680G
  • A42682T
  • A42684C
  • C42685T
  • C42690T
  • A42691G
  • C42693T
  • T42787A
  • T42790G
  • T42791A
  • A42794C
Deletions

42591, 42592, 42597-42626, 42631-42654, 42666-42670, 42696-42777, 42783, 42795-42833, 42846, 42847, 42864-42904, 42918-42927, 42941-42954, 42969-42978, 42995-43001, 43020-67450
Insertions

ins_42963:GGCGCAAGACGG

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG063

  • OPG063:P196E
  • OPG063:R199L
  • OPG063:N228L
  • OPG063:I229L
Deletions

OPG063

OPG063:230-232, OPG063:284-302, OPG063:367
Insertions
N/A

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