PP_003RPXW.1

USA/PP_003RPXW.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573061.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
606 (3.01%)
# of SNPs
24
# of deleted bases
5324
# of frame shifts
5
Frame shifts
OPG016:127(nt:190786-190790),OPG015_dup:19-21(nt:191108-191116),OPG015_dup:269-270(nt:191857-191863),OPG003_dup:209-589(nt:193225-194369),OPG002_dup:49-350(nt:194601-195508)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C189273T
  • A189418G
  • C189627A
  • T189674C
  • T189678A
  • C189679A
  • T189833A
  • A189921T
  • A189925T
  • A189927T
  • T189995C
  • A190194T
  • A190812G
  • T190966C
  • A191018C
  • G191078T
  • T191110C
  • A191116C
Deletions

189682-189829, 189839-189918, 189931-189992, 189999-190188, 190196-190596, 190602-190785, 190791-190807, 190818-190962, 190970-191016, 191023-191074, 191082-191107, 191117-191822, 191829-191856, 191864-192060, 192070-193131, 193140-193224, 193229-194287, 194295-194561, 194570-194600, 194607-194939, 194948-195151
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG005

  • OPG005:N74D

OPG016

  • OPG016:K31N
  • OPG016:I32E
Deletions

OPG016

OPG016:34-126
Insertions
N/A

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