PP_003RPS6.1

USA/PP_003RPS6.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573039.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
958 (0.901%)
# of SNPs
10
# of deleted bases
818
# of frame shifts
1
Frame shifts
OPG161:117-182(nt:141449-141647)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A141357C
  • G141360T
  • G141365C
  • C141367A
  • T141453C
  • C141454G
  • A141550T
  • G142337A
  • A142450C
  • T142454C
Deletions

141369-141448, 141458-141531, 142463-143126
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG163

  • OPG163:V46I
  • OPG163:Y85H
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue