PP_003RPPC.1

USA/PP_003RPPC.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573031.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1541 (42.3%)
# of SNPs
15
# of inserted bases
3
# of deleted bases
81915
# of frame shifts
2
Frame shifts
OPG080:100-104(nt:61709-61721),OPG080:165-772(nt:59703-61528)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A61461G
  • T61464A
  • A61466G
  • T61468G
  • C61469G
  • T61470G
  • T61524A
  • A61612G
  • A61618T
  • C61619T
  • C61689G
  • T61712G
  • T61716G
  • A61718G
  • A61762G
Deletions

61403-61453, 61473-61517, 61529-61608, 61622-61687, 61692-61708, 61722-61761, 61766-143381
Insertions

ins_61457:TAA

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions
N/A
Deletions

OPG080

OPG080:105-112, OPG080:138-164
Insertions

OPG080

ins_OPG080:118:GTN

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