PP_003RPNE.1

USA/PP_003RPNE.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573030.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1615 (8.74%)
# of SNPs
10
# of deleted bases
15613

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A159415G
  • C159447A
  • A159857G
  • G159963A
  • G159964T
  • C160120T
  • T160152C
  • C160171T
  • A160798G
  • T160804C
Deletions

160809-176421
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG185

  • OPG185:T167A
  • OPG185:D177E
  • OPG185:*314W
Deletions
N/A
Insertions
N/A

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