PP_003RPMG.1

USA/PP_003RPMG.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573029.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1652 (1.06%)
# of SNPs
12
# of deleted bases
441
# of frame shifts
3
Frame shifts
OPG107:10-190(nt:85537-86081),OPG109:739-740(nt:87229-87233),OPG109:794-796(nt:87060-87068)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A86225G
  • A86535G
  • A86916G
  • A87049G
  • G87055A
  • A87062T
  • G87063T
  • A87066T
  • T87068G
  • A87096G
  • G87098C
  • T87310C
Deletions

85536, 87069-87094, 87105-87228, 87234-87307, 87315-87530
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG108

  • OPG108:A2V
  • OPG108:V4A
Deletions

OPG107

OPG107:9

OPG109

OPG109:741-784, OPG109:786-793
Insertions
N/A

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