PP_003RPLJ.1

USA/PP_003RPLJ.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573028.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1689 (2.04%)
# of SNPs
81
# of inserted bases
10
# of deleted bases
2348
# of frame shifts
4
Frame shifts
OPG188:16-21(nt:161639-161658),OPG188:44-66(nt:161725-161791),OPG188:73-88(nt:161812-161857),OPG189:95-562(nt:163614-165018)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T161437A
  • T161439G
  • A161441G
  • C161442G
  • A161444T
  • G161446T
  • G161447A
  • T161448A
  • A161451C
  • C161475A
  • A161536C
  • A161539C
  • A161541G
  • T161542C
  • A161546G
  • A161548C
  • A161549C
  • A161550C
Deletions

161456-161470, 161477-161534, 161561-161582, 161590-161607, 161614-161638, 161659-161714, 161718-161724, 161737-161780, 161792-161805, 161811, 161818-161823, 161833-161845, 161858-161867, 163311-163314, 163327-163344, 163357-163434, 163452-163460, 163474-163479, 163489-163613, 163630-163673, 163681-165455
Insertions

ins_161730:CC, ins_163214:AACTAACT

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG187

  • OPG187:L279G
  • OPG187:T280F
  • OPG187:Y281K
  • OPG187:F282T
  • OPG187:E283S
  • OPG187:P285H

OPG188

  • OPG188:N356K
  • OPG188:Q376R

OPG189

  • OPG189:M1K
  • OPG189:D2K
  • OPG189:F3K
  • OPG189:F4K
Deletions

OPG188

OPG188:22-43, OPG188:67-70, OPG188:89-91

OPG189

OPG189:14-94
Insertions

OPG189

ins_OPG189:0:KKKKKKKKKKK

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