PP_003RPHQ.1

USA/PP_003RPHQ.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573021.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
2893 (1.59%)
# of SNPs
40
# of inserted bases
9
# of deleted bases
245
# of frame shifts
3
Frame shifts
OPG098:237-252(nt:77606-77655),OPG099:38-62(nt:77774-77850),OPG099:76-82(nt:77889-77909)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G77611A
  • A77615C
  • A77741G
  • A77747C
  • C77748A
  • G77750A
  • T77753C
  • T77756A
  • G77776C
  • T77778C
  • A77781C
  • T77794C
  • G77797C
  • T77798A
  • T77800C
  • T77801A
  • T77803C
  • T77804C
Deletions

77569-77605, 77617-77739, 77758-77773, 77785-77791, 77812-77838, 77858-77869, 77875-77888, 77917-77925
Insertions

ins_77850:CTGGT, ins_77904:C, ins_77909:T, ins_80577:GA

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG099

  • OPG099:D66G
  • OPG099:R67A
  • OPG099:L68P

OPG100

  • OPG100:K152Q

OPG102

  • OPG102:H192Y
Deletions

OPG098

OPG098:224-236

OPG099

OPG099:71-75, OPG099:83-88
Insertions
N/A

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