PP_003RPGT.1

USA/PP_003RPGT.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573020.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
3569 (1.81%)
# of SNPs
11

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T182260C
  • C182411A
  • A182443G
  • A182491G
  • C182600T
  • T183008C
  • C183466A
  • T183552A
  • A183695G
  • T183696C
  • A184137G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG210

  • OPG210:M302T
  • OPG210:H363R
  • OPG210:D379G
  • OPG210:S704Y
  • OPG210:L733I
  • OPG210:S781P
  • OPG210:T928A
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue